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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
59
total RNA-seq
46
ATAC-seq
36
DNase-seq
6
Hi-C
4
RRBS
3
single cell RNA-seq
1
WGBS
1
pCHi-C
1
small RNA-seq
1
snATAC-seq
Assay category
83
DNA accessibility
63
DNA binding
63
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
45
histone
45
histone modification
30
broad histone mark
15
narrow histone mark
13
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
34
June, 2019
26
August, 2017
26
October, 2019
12
May, 2019
8
July, 2019
5
March, 2020
4
February, 2020
2
August, 2021
2
May, 2022
1
January, 2018
Available data
144
bam
140
bigWig
125
bed narrowPeak
63
bigBed narrowPeak
63
tsv
49
bed broadPeak
37
bed bed3+
36
bigBed broadPeak
21
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
221
Homo sapiens
Biosample type
155
tissue
66
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
221
AMP
Genome assembly (visualization)
168
GRCh38
152
hg19
Lab
221
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
snATAC-seq
tissue
coronary artery
5
1
36
2
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
1
1
2
muscle of leg
7
13
1
muscle of arm
17
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cell line
smooth muscle cell of the coronary artery
6
52
8
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