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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
6
Hi-C
5
total RNA-seq
4
ChIP-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
7
Transcription
6
3D chromatin structure
5
DNA methylation
4
DNA binding
Target of assay
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
7
August, 2017
7
July, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
38
bam
38
bigWig
33
bed bed3+
32
bed broadPeak
32
bed narrowPeak
32
bigBed broadPeak
32
bigBed narrowPeak
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
57
Homo sapiens
Biosample type
57
tissue
primary cell
Organ
678
liver
575
connective tissue
507
pancreas
457
adipose tissue
298
kidney
280
heart
158
bone element
145
blood vessel
145
vasculature
119
artery
91
epithelium
81
brain
73
limb
60
blood
60
bodily fluid
57
musculature of body
54
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
42
hg19
37
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
primary cell
target.investigated_as!
histone
BIOSAMPLE
ASSAY
57 results
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DNase-seq
Hi-C
total RNA-seq
ChIP-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
1
3
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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