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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
175
total RNA-seq
36
DNase-seq
22
ATAC-seq
7
Hi-C
5
RRBS
5
WGBS
4
small RNA-seq
2
pCHi-C
2
single cell RNA-seq
1
snATAC-seq
Assay category
184
DNA binding
181
Transcription
59
DNA accessibility
10
DNA methylation
7
3D chromatin structure
Target of assay
95
histone modification
94
histone
53
narrow histone mark
50
control
41
broad histone mark
39
transcription factor
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
80
August, 2017
48
December, 2017
42
May, 2022
32
June, 2019
15
July, 2019
8
March, 2020
7
May, 2019
7
November, 2018
6
October, 2019
3
February, 2020
1
February, 2021
1
January, 2018
Available data
332
bam
322
bigWig
164
bed narrowPeak
161
tsv
87
bigBed narrowPeak
85
fastq
85
tagAlign
48
bed broadPeak
39
bed bed3+
35
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
csv
1
txt
Organism
443
Homo sapiens
Biosample type
443
tissue
401
cell line
28
primary cell
15
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
443
AMP
Genome assembly (visualization)
329
hg19
280
GRCh38
Lab
403
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
443 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
WGBS
small RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
liver
145
167
2
20
1
1
3
1
1
1
skeletal muscle tissue
22
1
1
4
1
1
1
muscle of leg
7
13
1
right lobe of liver
10
3
2
1
1
2
muscle of arm
17
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