Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
29
ChIP-seq
13
ATAC-seq
7
total RNA-seq
6
Hi-C
4
RRBS
1
RNA microarray
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
46
DNA accessibility
29
DNA binding
9
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
26
August, 2017
14
February, 2023
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
December, 2019
1
January, 2018
Available data
63
bed narrowPeak
57
bigWig
45
bed broadPeak
44
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
10
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
97
Homo sapiens
Biosample type
420
primary cell
97
tissue
79
cell line
24
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
Genome assembly (visualization)
73
hg19
42
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
2
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
97 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
RNA microarray
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
muscle of leg
13
7
1
muscle of arm
17
pigmented layer of retina
12
2
gastrocnemius medialis
1
4
psoas muscle
2
2
1
forelimb muscle
1
hindlimb muscle
1
left ventricle myocardium
1
renal glomerulus
1
See all biosamples
Download