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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
6
Hi-C
5
total RNA-seq
4
ChIP-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
7
Transcription
6
3D chromatin structure
5
DNA methylation
4
DNA binding
Target of assay
25
histone
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
7
August, 2017
7
July, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
38
bam
38
bigWig
33
bed bed3+
32
bed broadPeak
32
bed narrowPeak
32
bigBed broadPeak
32
bigBed narrowPeak
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
57
Homo sapiens
Biosample type
57
tissue
6
primary cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
291
liver
279
kidney
218
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
42
hg19
37
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
57 results
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DNase-seq
Hi-C
total RNA-seq
ChIP-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
1
3
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
forelimb muscle
1
hindlimb muscle
1
left ventricle myocardium
1
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