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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
6
3D chromatin structure
6
DNA methylation
3
Transcription
1
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
June, 2019
8
July, 2019
7
May, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
64
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
56
Homo sapiens
Biosample type
44
tissue
12
primary cell
Organ
589
liver
514
pancreas
372
epithelium
251
heart
234
brain
216
kidney
183
connective tissue
162
vasculature
158
blood vessel
97
bone element
87
adipose tissue
81
artery
79
limb
69
blood
69
bodily fluid
56
musculature of body
38
eye
36
nerve
24
spleen
20
embryo
20
lung
20
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
35
hg19
16
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
bed bed3+
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
psoas muscle
2
1
primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
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