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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
29
ATAC-seq
25
total RNA-seq
6
Hi-C
6
RRBS
5
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
Assay category
44
DNA binding
29
DNA accessibility
28
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
31
February, 2023
26
August, 2017
21
October, 2019
13
June, 2019
11
July, 2019
7
May, 2019
5
March, 2020
3
February, 2020
1
January, 2018
1
May, 2022
Available data
93
bed narrowPeak
74
bigWig
64
bam
53
bigBed narrowPeak
50
bed broadPeak
bed bed3+
37
bigBed broadPeak
15
tagAlign
14
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
119
Homo sapiens
Biosample type
102
tissue
17
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
119
AMP
Genome assembly (visualization)
69
hg19
22
GRCh38
Lab
119
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
islet of Langerhans
2
1
14
4
retina
15
3
pigmented layer of retina
12
2
muscle of leg
7
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
1
1
retinal pigment epithelial cell
3
1
skeletal muscle cell
2
1
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