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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
33
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
41
June, 2019
21
August, 2017
8
July, 2019
6
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
9
tsv
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
86
Homo sapiens
Biosample type
75
tissue
11
primary cell
Organ
887
pancreas
680
liver
646
connective tissue
488
epithelium
465
adipose tissue
365
heart
338
kidney
253
brain
212
vasculature
208
blood vessel
159
bone element
132
artery
104
limb
86
musculature of body
63
blood
63
bodily fluid
59
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
16
skeleton
15
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
70
hg19
52
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
bed bedMethyl
target.investigated_as!
control
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
2
1
1
1
1
muscle of leg
6
13
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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