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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
4
total RNA-seq
3
RRBS
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
snATAC-seq
Assay category
14
DNA binding
6
Transcription
3
DNA methylation
2
3D chromatin structure
2
DNA accessibility
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
Date released
8
June, 2019
6
May, 2019
5
July, 2019
4
March, 2020
2
August, 2017
1
January, 2018
1
May, 2022
Available data
67
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
27
Homo sapiens
Biosample type
16
tissue
11
primary cell
Organ
640
pancreas
580
connective tissue
562
liver
423
adipose tissue
295
epithelium
161
heart
149
vasculature
147
blood vessel
127
brain
89
artery
70
bone element
60
limb
58
kidney
55
blood
55
bodily fluid
30
eye
29
embryo
29
nerve
27
musculature of body
13
spleen
13
vein
12
skeleton
2
pericardium
1
pituitary gland
Project
27
AMP
Genome assembly (visualization)
27
hg19
20
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
1
audit script error
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
snATAC-seq
tissue
muscle of leg
6
skeletal muscle tissue
1
2
1
1
1
psoas muscle
2
2
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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