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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
11
August, 2017
10
June, 2019
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
46
Homo sapiens
Biosample type
34
tissue
12
primary cell
Organ
919
pancreas
725
liver
671
connective tissue
496
epithelium
486
adipose tissue
315
heart
272
kidney
237
brain
217
vasculature
216
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
56
eye
46
musculature of body
41
nerve
37
embryo
22
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
24
hg19
19
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
bed broadPeak
bed bedMethyl
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
2
1
1
1
1
muscle of leg
7
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
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