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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
12
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
10
July, 2019
5
March, 2020
2
February, 2020
2
June, 2019
1
May, 2019
1
May, 2022
Available data
34
bigWig
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
34
Homo sapiens
Biosample type
29
tissue
5
primary cell
Organ
633
pancreas
592
connective tissue
476
adipose tissue
349
liver
304
epithelium
202
heart
152
kidney
147
bone element
103
vasculature
101
blood vessel
79
brain
67
artery
34
musculature of body
30
limb
27
eye
23
embryo
16
nerve
11
spleen
10
lung
9
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
11
hg19
7
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed narrowPeak
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
1
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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