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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
10
July, 2019
4
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
68
bigWig
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
35
Homo sapiens
Biosample type
30
tissue
5
primary cell
Organ
731
pancreas
604
connective tissue
476
adipose tissue
373
epithelium
347
liver
199
heart
169
kidney
150
bone element
102
vasculature
100
blood vessel
81
brain
67
artery
35
musculature of body
30
limb
24
eye
23
embryo
19
lung
16
nerve
15
blood
15
bodily fluid
10
spleen
9
vein
8
skeleton
4
gonad
4
ovary
2
pericardium
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
Project
35
AMP
Genome assembly (visualization)
13
hg19
7
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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