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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
5
RRBS
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
7
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
10
July, 2019
5
March, 2020
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
68
bigWig
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
34
Homo sapiens
Biosample type
29
tissue
5
primary cell
Organ
731
pancreas
607
connective tissue
476
adipose tissue
373
epithelium
349
liver
199
heart
171
kidney
151
bone element
100
vasculature
98
blood vessel
71
brain
65
artery
34
musculature of body
27
eye
27
limb
23
embryo
20
lung
15
blood
15
bodily fluid
15
nerve
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
13
hg19
7
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
month_released!
February, 2020
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
1
1
1
psoas muscle
2
2
1
gastrocnemius medialis
4
muscle of leg
1
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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