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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
24
ChIP-seq
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
24
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
43
June, 2019
9
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
9
tsv
4
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
77
Homo sapiens
Biosample type
64
tissue
13
primary cell
Organ
921
pancreas
702
liver
659
connective tissue
511
epithelium
481
adipose tissue
379
heart
350
kidney
228
vasculature
223
blood vessel
166
brain
159
bone element
135
artery
121
limb
77
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
57
hg19
52
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
bigBed bedMethyl
tagAlign
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
77 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
muscle of arm
17
skeletal muscle tissue
7
1
2
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
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