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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
6
Hi-C
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
25
DNA binding
6
3D chromatin structure
6
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
6
control
Date released
26
August, 2017
8
July, 2019
3
March, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
64
bigWig
60
bed narrowPeak
53
bam
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
43
Homo sapiens
Biosample type
39
tissue
4
primary cell
Organ
452
pancreas
317
epithelium
244
liver
190
kidney
187
heart
182
connective tissue
142
brain
97
bone element
92
vasculature
90
blood vessel
83
adipose tissue
60
artery
43
musculature of body
36
eye
31
limb
23
embryo
20
lung
15
blood
15
bodily fluid
12
nerve
12
skeleton
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
22
hg19
3
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigBed narrowPeak
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
gastrocnemius medialis
4
psoas muscle
2
1
muscle of leg
1
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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