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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
24
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
5
control
Date released
26
August, 2017
10
July, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
June, 2019
1
May, 2019
Available data
60
bigWig
52
bed narrowPeak
48
bam
45
bed broadPeak
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
48
Homo sapiens
Biosample type
44
tissue
4
primary cell
Organ
774
pancreas
647
connective tissue
480
adipose tissue
432
liver
362
epithelium
257
heart
232
kidney
156
brain
153
vasculature
151
blood vessel
116
artery
75
bone element
55
eye
48
musculature of body
38
limb
31
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
48
AMP
Genome assembly (visualization)
26
hg19
7
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
audit script error
inconsistent ontology term
files.file_type!
bigBed narrowPeak
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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