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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
23
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
4
control
Date released
26
August, 2017
7
July, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
57
bigWig
51
bed narrowPeak
45
bed broadPeak
44
bam
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
44
Homo sapiens
Biosample type
44
tissue
5
primary cell
Organ
537
connective tissue
478
adipose tissue
443
pancreas
312
liver
212
kidney
185
heart
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
23
hg19
5
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
1
1
left ventricle myocardium
1
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