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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
11
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
2
DNA accessibility
Target of assay
19
histone
19
histone modification
broad histone mark
7
narrow histone mark
4
control
Date released
14
August, 2017
7
July, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
45
bigWig
40
bam
39
bed narrowPeak
37
bed broadPeak
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
7
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
32
Homo sapiens
Biosample type
32
tissue
5
primary cell
Organ
517
connective tissue
458
adipose tissue
429
pancreas
294
liver
212
kidney
202
heart
158
bone element
137
brain
71
blood vessel
71
vasculature
53
eye
48
artery
38
limb
32
musculature of body
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
15
hg19
5
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed narrowPeak
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
10
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
1
1
left ventricle myocardium
1
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