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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
total RNA-seq
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
6
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
22
August, 2017
7
July, 2019
7
May, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
64
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
3
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
85
Homo sapiens
Biosample type
73
tissue
12
primary cell
Organ
319
heart
290
kidney
254
pancreas
246
brain
211
epithelium
168
vasculature
166
blood vessel
141
liver
115
limb
108
connective tissue
97
bone element
85
artery
85
musculature of body
49
adipose tissue
41
eye
38
nerve
22
vein
20
lung
18
ureter
12
skeleton
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
66
hg19
49
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
fastq
assay_title!
RRBS
total RNA-seq
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
DNase-seq
Hi-C
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
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