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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
29
ChIP-seq
6
Hi-C
5
total RNA-seq
2
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
29
DNA binding
7
Transcription
6
3D chromatin structure
3
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
24
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
57
bigWig
51
bed narrowPeak
45
bed broadPeak
44
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
fastq
2
hic
1
txt
Organism
80
Homo sapiens
Biosample type
80
tissue
primary cell
Organ
547
connective tissue
445
adipose tissue
387
pancreas
340
heart
318
kidney
312
liver
253
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
99
epithelium
80
musculature of body
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
10
embryo
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
59
hg19
42
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
fastq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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