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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
19
ChIP-seq
6
Hi-C
6
total RNA-seq
3
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
19
DNA binding
9
Transcription
6
3D chromatin structure
4
DNA methylation
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
39
June, 2019
12
August, 2017
10
July, 2019
5
March, 2020
3
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
52
bigWig
49
bam
44
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
9
tsv
7
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
fastq
2
hic
1
txt
Organism
74
Homo sapiens
Biosample type
64
tissue
10
primary cell
Organ
551
connective tissue
449
pancreas
427
adipose tissue
339
kidney
316
heart
309
liver
246
epithelium
201
brain
185
vasculature
182
blood vessel
159
bone element
127
artery
88
limb
74
musculature of body
61
eye
27
nerve
20
lung
18
ureter
16
skeleton
13
vein
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
74
AMP
Genome assembly (visualization)
55
hg19
45
GRCh38
Lab
74
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
files.file_type!
fastq
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
74 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
3
1
skeletal muscle tissue
10
1
2
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
1
2
1
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