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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
35
DNase-seq
11
total RNA-seq
5
RRBS
4
Hi-C
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
74
DNA binding
38
DNA accessibility
14
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
57
histone
57
histone modification
36
broad histone mark
21
narrow histone mark
17
control
Date released
43
June, 2019
42
October, 2019
26
August, 2017
10
July, 2019
7
May, 2019
3
February, 2020
3
March, 2020
2
May, 2022
1
January, 2018
Available data
99
bam
99
bigWig
87
bed narrowPeak
73
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
14
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
hic
1
txt
Organism
137
Homo sapiens
Biosample type
123
tissue
14
primary cell
Organ
939
pancreas
789
liver
684
connective tissue
518
epithelium
491
adipose tissue
353
kidney
350
heart
286
brain
233
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
102
hg19
84
GRCh38
Lab
137
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
hic
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
Hi-C
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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