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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
5
RRBS
1
WGBS
1
single cell RNA-seq
Assay category
39
DNA binding
DNA accessibility
6
3D chromatin structure
6
DNA methylation
1
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
June, 2019
7
May, 2019
6
July, 2019
2
March, 2020
1
May, 2022
Available data
34
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
52
Homo sapiens
Biosample type
41
tissue
11
primary cell
Organ
588
liver
358
pancreas
246
epithelium
223
brain
172
connective tissue
167
kidney
110
vasculature
108
heart
106
blood vessel
89
bone element
82
adipose tissue
71
limb
60
blood
60
bodily fluid
52
musculature of body
35
nerve
34
artery
24
eye
23
embryo
22
spleen
19
vein
9
lung
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
thymus
Project
52
AMP
Genome assembly (visualization)
32
hg19
14
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
tsv
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
52 results
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Clear Filters
ChIP-seq
Hi-C
RRBS
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
muscle of leg
7
1
gastrocnemius medialis
4
psoas muscle
2
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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