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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
17
ChIP-seq
6
Hi-C
1
ATAC-seq
1
RRBS
1
WGBS
1
single cell RNA-seq
snATAC-seq
Assay category
34
DNA accessibility
17
DNA binding
6
3D chromatin structure
2
DNA methylation
1
Transcription
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
43
June, 2019
August, 2017
7
May, 2019
6
July, 2019
2
March, 2020
1
January, 2018
1
May, 2022
Available data
57
bam
55
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
Organism
60
Homo sapiens
Biosample type
48
tissue
12
primary cell
Organ
563
liver
419
pancreas
339
epithelium
324
kidney
260
brain
225
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
83
artery
81
connective tissue
61
blood
61
bodily fluid
60
musculature of body
56
eye
38
nerve
33
adipose tissue
24
spleen
23
embryo
22
vein
18
ureter
16
skeleton
9
lung
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
60
AMP
Genome assembly (visualization)
51
hg19
47
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
files.file_type!
tsv
assay_title!
snATAC-seq
month_released!
August, 2017
BIOSAMPLE
ASSAY
60 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
RRBS
WGBS
single cell RNA-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
skeletal muscle tissue
1
1
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
1
2
1
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