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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
5
RRBS
4
Hi-C
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
85
Homo sapiens
Biosample type
73
tissue
12
primary cell
Organ
615
liver
522
pancreas
363
epithelium
330
kidney
260
brain
205
connective tissue
182
heart
166
vasculature
160
blood vessel
115
limb
101
bone element
89
adipose tissue
85
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
85
AMP
Genome assembly (visualization)
65
hg19
47
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
tsv
bedpe bed3+
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
DNase-seq
RRBS
Hi-C
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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