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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
RRBS
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
34
DNA accessibility
6
3D chromatin structure
1
DNA methylation
1
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
22
August, 2017
7
May, 2019
5
July, 2019
2
March, 2020
2
May, 2022
January, 2018
Available data
67
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
81
Homo sapiens
Biosample type
70
tissue
11
primary cell
Organ
615
liver
527
pancreas
362
epithelium
326
kidney
258
brain
223
heart
204
connective tissue
167
vasculature
162
blood vessel
115
limb
101
bone element
89
adipose tissue
83
artery
81
musculature of body
68
blood
68
bodily fluid
55
eye
38
nerve
24
spleen
22
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
81
AMP
Genome assembly (visualization)
63
hg19
47
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
tsv
month_released!
January, 2018
assay_title!
RRBS
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
DNase-seq
Hi-C
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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