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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
RRBS
2
Hi-C
1
ATAC-seq
1
DNase-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
32
DNA binding
5
DNA methylation
3
DNA accessibility
2
3D chromatin structure
1
Transcription
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
26
August, 2017
11
June, 2019
2
March, 2020
2
May, 2022
1
January, 2018
1
July, 2019
Available data
29
bigWig
22
bed narrowPeak
17
bam
15
tagAlign
14
bed broadPeak
9
bigBed narrowPeak
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
43
Homo sapiens
Biosample type
31
tissue
12
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
43
AMP
Genome assembly (visualization)
29
hg19
9
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
tsv
organ_slims!
limb
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
RRBS
Hi-C
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
psoas muscle
2
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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