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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
5
RRBS
2
Hi-C
1
ATAC-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
22
DNA binding
5
DNA methylation
2
3D chromatin structure
2
DNA accessibility
1
Transcription
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
26
August, 2017
June, 2019
2
March, 2020
2
May, 2022
1
January, 2018
1
July, 2019
Available data
20
bigWig
15
tagAlign
13
bed broadPeak
13
bed narrowPeak
tsv
6
bam
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
32
Homo sapiens
Biosample type
31
tissue
1
primary cell
Organ
615
liver
525
pancreas
348
epithelium
249
kidney
230
brain
190
heart
188
connective tissue
161
vasculature
157
blood vessel
101
bone element
89
adipose tissue
limb
81
artery
69
blood
69
bodily fluid
49
eye
44
musculature of body
38
nerve
24
spleen
23
embryo
22
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
32
AMP
Genome assembly (visualization)
20
hg19
Lab
32
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
tsv
organ_slims!
limb
month_released!
June, 2019
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
RRBS
Hi-C
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
psoas muscle
2
primary cell
skeletal muscle cell
1
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