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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
33
DNase-seq
9
snATAC-seq
6
Hi-C
5
RRBS
2
ATAC-seq
1
WGBS
1
single cell RNA-seq
Assay category
99
DNA binding
44
DNA accessibility
6
3D chromatin structure
6
DNA methylation
1
Transcription
Target of assay
51
transcription factor
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
12
control
10
RNA binding protein
10
chromatin remodeller
Date released
43
June, 2019
27
December, 2018
26
August, 2017
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
July, 2019
2
January, 2018
2
March, 2020
2
May, 2022
Available data
123
bigWig
117
bam
114
bed narrowPeak
101
bigBed narrowPeak
62
fastq
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
156
Homo sapiens
Biosample type
75
tissue
61
cell line
20
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
148
AMP
8
T1D
Genome assembly (visualization)
122
hg19
101
GRCh38
Lab
148
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
1
inconsistent control
files.file_type!
tsv
BIOSAMPLE
ASSAY
156 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
RRBS
ATAC-seq
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
+ See 2 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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