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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
33
DNase-seq
9
snATAC-seq
6
Hi-C
5
RRBS
2
ATAC-seq
1
WGBS
1
single cell RNA-seq
Assay category
65
DNA binding
44
DNA accessibility
6
3D chromatin structure
6
DNA methylation
1
Transcription
Target of assay
51
transcription factor
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
12
control
10
RNA binding protein
10
chromatin remodeller
Date released
35
June, 2019
27
December, 2018
17
January, 2019
15
November, 2018
8
January, 2021
7
August, 2017
6
July, 2019
2
January, 2018
2
March, 2020
2
May, 2022
1
May, 2019
Available data
102
bam
95
bigWig
86
bed narrowPeak
86
bigBed narrowPeak
61
fastq
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tagAlign
1
txt
Organism
122
Homo sapiens
Biosample type
60
cell line
50
tissue
12
primary cell
Organ
515
liver
378
pancreas
300
kidney
275
epithelium
128
connective tissue
128
heart
101
bone element
97
vasculature
92
blood vessel
73
brain
68
blood
68
bodily fluid
66
limb
63
artery
58
adipose tissue
54
musculature of body
53
eye
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
11
embryo
7
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
114
AMP
8
T1D
Genome assembly (visualization)
94
hg19
87
GRCh38
Lab
114
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
1
inconsistent control
files.file_type!
tsv
target.investigated_as!
histone
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
RRBS
ATAC-seq
WGBS
single cell RNA-seq
cell line
GM12878
59
1
tissue
muscle of arm
17
muscle of leg
1
13
1
skeletal muscle tissue
3
1
4
1
1
gastrocnemius medialis
4
psoas muscle
2
+ See 2 more…
primary cell
peripheral blood mononuclear cell
8
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
See all biosamples
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