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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
11
snATAC-seq
10
single cell RNA-seq
5
RRBS
1
ATAC-seq
1
WGBS
Assay category
45
DNA accessibility
39
DNA binding
10
Transcription
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
19
April, 2020
7
May, 2019
2
July, 2019
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
99
Homo sapiens
Biosample type
88
tissue
12
primary cell
Organ
613
liver
520
pancreas
360
epithelium
329
kidney
257
brain
222
heart
205
connective tissue
163
vasculature
157
blood vessel
111
limb
101
bone element
90
adipose tissue
83
artery
81
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
20
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
81
AMP
19
LungMap
Genome assembly (visualization)
65
hg19
47
GRCh38
Lab
81
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
tsv
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
DNase-seq
snATAC-seq
single cell RNA-seq
RRBS
ATAC-seq
WGBS
tissue
skeletal muscle tissue
22
1
1
4
1
muscle of leg
7
13
1
lung
10
9
muscle of arm
17
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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