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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
38
DNase-seq
Assay category
58
DNA binding
38
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
35
June, 2019
3
November, 2018
Available data
738
bam
690
bigWig
501
bed narrowPeak
467
fastq
405
bigBed narrowPeak
183
tsv
109
bed broadPeak
101
tagAlign
96
bigBed broadPeak
47
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
4
bedpe bed3+
4
hic
3
tar
1
bed bed3
1
csv
1
hdf5
1
txt
1
vcf
Organism
96
Homo sapiens
Biosample type
58
cell line
35
tissue
3
primary cell
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
96
AMP
Genome assembly (visualization)
96
hg19
82
GRCh38
Lab
96
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
tissue
muscle of arm
17
muscle of leg
13
liver
2
forelimb muscle
1
hindlimb muscle
1
+ See 1 more…
primary cell
hepatic stellate cell
1
hepatocyte
1
skeletal muscle cell
1
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