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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
Assay category
34
DNA accessibility
27
DNA binding
6
Transcription
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
41
June, 2019
13
August, 2017
6
May, 2019
4
July, 2019
2
March, 2020
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
67
Homo sapiens
Biosample type
56
tissue
11
primary cell
Organ
621
liver
619
pancreas
568
connective tissue
423
adipose tissue
301
epithelium
222
brain
178
heart
154
vasculature
149
blood vessel
131
kidney
90
limb
85
artery
67
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
15
vein
14
spleen
6
eye
1
pericardium
1
pituitary gland
Project
67
AMP
Genome assembly (visualization)
67
hg19
52
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
67 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
tissue
muscle of leg
13
6
muscle of arm
17
skeletal muscle tissue
13
1
1
1
psoas muscle
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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