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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
17
ChIP-seq
6
total RNA-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
Assay category
33
DNA accessibility
17
DNA binding
8
Transcription
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
43
June, 2019
7
May, 2019
5
July, 2019
3
March, 2020
2
February, 2020
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
60
Homo sapiens
Biosample type
47
tissue
13
primary cell
Organ
700
pancreas
693
liver
597
connective tissue
445
adipose tissue
327
epithelium
309
heart
257
brain
195
vasculature
190
blood vessel
156
kidney
117
limb
106
artery
66
bone element
60
blood
60
bodily fluid
60
musculature of body
43
nerve
36
embryo
25
spleen
20
vein
18
ureter
12
eye
8
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
53
GRCh38
53
hg19
Lab
60
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
BIOSAMPLE
ASSAY
60 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
pCHi-C
tissue
muscle of leg
13
7
1
muscle of arm
17
psoas muscle
2
1
skeletal muscle tissue
1
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
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