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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
DNase-seq
4
RRBS
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
5
Transcription
4
DNA methylation
2
3D chromatin structure
1
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
30
bigWig
27
bed narrowPeak
19
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
Organism
52
Homo sapiens
Biosample type
42
tissue
10
primary cell
Organ
928
pancreas
775
liver
657
connective tissue
487
epithelium
477
adipose tissue
338
heart
255
kidney
236
brain
212
vasculature
209
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
52
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
19
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
34
hg19
15
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
audit script error
month_released!
July, 2019
audit.ERROR.category!
audit script error
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
psoas muscle
2
2
1
gastrocnemius medialis
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
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