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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
4
RRBS
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
5
Transcription
4
DNA methylation
2
3D chromatin structure
2
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
July, 2019
5
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
63
bigWig
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
26
Homo sapiens
Biosample type
24
tissue
2
primary cell
Organ
726
pancreas
591
connective tissue
466
adipose tissue
360
epithelium
340
liver
181
heart
161
kidney
151
bone element
93
vasculature
92
blood vessel
66
brain
65
artery
27
eye
26
musculature of body
25
limb
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
July, 2019
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
1
psoas muscle
2
2
1
gastrocnemius medialis
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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