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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
4
RRBS
2
Hi-C
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
4
DNA methylation
3
Transcription
2
3D chromatin structure
1
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
May, 2019
Available data
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
23
Homo sapiens
Biosample type
21
tissue
2
primary cell
Organ
321
pancreas
219
kidney
217
epithelium
167
liver
165
heart
113
connective tissue
101
bone element
79
blood vessel
79
vasculature
66
adipose tissue
62
brain
56
artery
54
eye
27
limb
23
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
5
hg19
Lab
23
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
July, 2019
files.file_type!
bigWig
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
RRBS
Hi-C
total RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
psoas muscle
2
1
gastrocnemius medialis
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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