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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
4
RRBS
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
5
Transcription
4
DNA methylation
2
3D chromatin structure
2
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
13
August, 2017
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
63
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
40
Homo sapiens
Biosample type
30
tissue
10
primary cell
Organ
919
pancreas
718
liver
656
connective tissue
489
epithelium
476
adipose tissue
338
heart
265
kidney
221
brain
207
vasculature
206
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
41
nerve
40
musculature of body
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
22
hg19
15
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
month_released!
July, 2019
files.file_type!
bed broadPeak
organ_slims!
skin of body
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
1
muscle of leg
7
psoas muscle
2
2
1
gastrocnemius medialis
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
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