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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
35
DNase-seq
4
Hi-C
4
RRBS
4
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
56
DNA binding
38
DNA accessibility
5
Transcription
4
3D chromatin structure
4
DNA methylation
Target of assay
48
histone
48
histone modification
29
broad histone mark
19
narrow histone mark
8
control
Date released
43
June, 2019
26
August, 2017
21
October, 2019
July, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
78
bigWig
73
bed narrowPeak
72
bam
60
bigBed narrowPeak
50
bed broadPeak
37
bigBed broadPeak
36
bed bed3+
15
tagAlign
5
tsv
4
hic
3
bedpe bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
fastq
1
tar
1
txt
Organism
108
Homo sapiens
Biosample type
75
tissue
33
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
108
AMP
Genome assembly (visualization)
85
hg19
60
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
2
audit script error
month_released!
July, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
FAIRE-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
2
1
forelimb muscle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
See all biosamples
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