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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
37
DNase-seq
10
total RNA-seq
9
ATAC-seq
4
RRBS
2
Hi-C
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
98
DNA binding
47
DNA accessibility
11
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
76
histone
76
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
69
October, 2019
43
June, 2019
26
August, 2017
July, 2019
7
May, 2019
6
February, 2021
5
March, 2020
4
February, 2020
2
May, 2022
1
January, 2018
Available data
126
bam
115
bigWig
114
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
11
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
163
Homo sapiens
Biosample type
152
tissue
11
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
163
AMP
Genome assembly (visualization)
126
hg19
106
GRCh38
Lab
163
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
July, 2019
BIOSAMPLE
ASSAY
163 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
RRBS
Hi-C
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
4
1
1
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
+ See 12 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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