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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
ChIP-seq
4
RRBS
4
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
6
DNA binding
5
Transcription
4
DNA methylation
Target of assay
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
35
June, 2019
July, 2019
7
August, 2017
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
38
bam
36
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
hic
2
tagAlign
1
txt
Organism
51
Homo sapiens
Biosample type
48
tissue
3
primary cell
Organ
782
pancreas
677
liver
588
connective tissue
447
adipose tissue
412
epithelium
312
kidney
268
heart
159
bone element
150
vasculature
146
blood vessel
118
artery
81
brain
68
blood
68
bodily fluid
68
limb
57
eye
51
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
39
hg19
35
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
month_released!
July, 2019
target.investigated_as!
histone
files.file_type!
hic
BIOSAMPLE
ASSAY
51 results
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DNase-seq
ChIP-seq
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
3
4
1
1
1
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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