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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
5
RRBS
4
Hi-C
2
small RNA-seq
2
total RNA-seq
1
ATAC-seq
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
5
DNA methylation
5
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
9
July, 2019
7
May, 2019
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
65
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
fastq
1
txt
Organism
88
Homo sapiens
Biosample type
74
tissue
14
primary cell
Organ
880
pancreas
782
liver
674
connective tissue
482
adipose tissue
471
epithelium
375
heart
352
kidney
272
brain
227
vasculature
221
blood vessel
159
bone element
139
artery
118
limb
88
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
22
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
88
AMP
Genome assembly (visualization)
69
hg19
50
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
March, 2020
February, 2020
assay_title!
WGBS
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
4
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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