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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
29
ChIP-seq
4
Hi-C
4
RRBS
3
total RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
29
DNA binding
5
DNA methylation
5
Transcription
4
3D chromatin structure
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
26
August, 2017
7
July, 2019
7
May, 2019
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
55
bigWig
51
bed narrowPeak
45
bed broadPeak
42
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
4
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
fastq
1
txt
Organism
77
Homo sapiens
Biosample type
77
tissue
primary cell
Organ
774
liver
643
connective tissue
586
pancreas
488
adipose tissue
333
heart
316
kidney
263
brain
196
blood vessel
196
vasculature
158
bone element
139
artery
122
limb
113
epithelium
77
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
24
spleen
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
77
AMP
Genome assembly (visualization)
57
hg19
40
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
March, 2020
biosample_type!
primary cell
BIOSAMPLE
ASSAY
77 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
forelimb muscle
1
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