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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
4
Hi-C
4
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
7
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
24
August, 2017
8
July, 2019
7
May, 2019
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
66
bigWig
60
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
6
tsv
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
87
Homo sapiens
Biosample type
74
tissue
13
primary cell
Organ
926
pancreas
785
liver
679
connective tissue
512
epithelium
488
adipose tissue
348
kidney
338
heart
282
brain
230
vasculature
225
blood vessel
159
bone element
141
artery
121
limb
87
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
22
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
87
AMP
Genome assembly (visualization)
66
hg19
50
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
March, 2020
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
4
1
forelimb muscle
1
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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