Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
33
DNase-seq
4
Hi-C
4
total RNA-seq
3
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
40
DNA binding
36
DNA accessibility
7
Transcription
4
3D chromatin structure
4
DNA methylation
Target of assay
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
6
control
Date released
43
June, 2019
24
August, 2017
10
July, 2019
7
May, 2019
March, 2020
2
February, 2020
2
May, 2022
2
October, 2019
1
January, 2018
Available data
67
bigWig
61
bed narrowPeak
56
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
16
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
fastq
1
txt
Organism
91
Homo sapiens
Biosample type
77
tissue
14
primary cell
Organ
581
connective tissue
461
pancreas
446
adipose tissue
386
heart
352
kidney
323
liver
263
brain
261
epithelium
226
vasculature
223
blood vessel
159
bone element
141
artery
122
limb
89
musculature of body
61
eye
43
nerve
21
vein
19
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
91
AMP
Genome assembly (visualization)
68
hg19
52
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
March, 2020
files.file_type!
fastq
BIOSAMPLE
ASSAY
91 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
forelimb muscle
1
+ See 4 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
See all biosamples
Download