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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
2
small RNA-seq
2
total RNA-seq
1
ATAC-seq
1
WGBS
Assay category
34
DNA accessibility
27
DNA binding
4
Transcription
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
41
June, 2019
13
August, 2017
6
May, 2019
5
July, 2019
March, 2020
1
January, 2018
Available data
66
bigWig
60
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
66
Homo sapiens
Biosample type
55
tissue
11
primary cell
Organ
621
liver
613
pancreas
570
connective tissue
425
adipose tissue
296
epithelium
222
brain
182
heart
154
vasculature
149
blood vessel
131
kidney
91
limb
85
artery
66
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
66
AMP
Genome assembly (visualization)
65
hg19
51
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
month_released!
March, 2020
BIOSAMPLE
ASSAY
66 results
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DNase-seq
ChIP-seq
small RNA-seq
total RNA-seq
ATAC-seq
WGBS
tissue
muscle of leg
13
6
1
muscle of arm
17
skeletal muscle tissue
13
1
1
1
forelimb muscle
1
hindlimb muscle
1
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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