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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
5
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
31
DNA binding
7
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
34
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
58
bigWig
52
bed narrowPeak
46
bam
45
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
82
Homo sapiens
Biosample type
76
tissue
6
primary cell
Organ
856
pancreas
787
liver
664
connective tissue
489
adipose tissue
432
epithelium
380
heart
331
kidney
281
brain
231
vasculature
226
blood vessel
141
artery
121
limb
82
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
24
spleen
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
82
AMP
Genome assembly (visualization)
61
hg19
43
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
month_released!
March, 2020
organ_slims!
vein
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
82 results
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DNase-seq
ChIP-seq
RRBS
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
muscle of leg
12
7
1
muscle of arm
17
gastrocnemius medialis
4
1
forelimb muscle
1
+ See 2 more…
primary cell
skeletal muscle cell
1
2
1
skeletal muscle satellite cell
1
1
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