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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
5
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
43
DNA binding
7
Transcription
6
DNA methylation
4
3D chromatin structure
2
DNA accessibility
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
March, 2020
4
October, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
66
bigWig
60
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
bigBed broadPeak
15
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
62
Homo sapiens
Biosample type
49
tissue
13
primary cell
Organ
925
pancreas
725
liver
673
connective tissue
496
epithelium
488
adipose tissue
356
heart
274
kidney
246
brain
215
vasculature
213
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
58
musculature of body
57
eye
41
nerve
37
embryo
23
spleen
19
lung
17
vein
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
62
AMP
Genome assembly (visualization)
36
hg19
18
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
month_released!
March, 2020
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
RRBS
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
islet of Langerhans
4
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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