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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
10
ChIP-seq
2
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
33
DNA accessibility
10
DNA binding
2
3D chromatin structure
2
Transcription
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
2
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
January, 2018
Available data
45
bam
43
bigWig
41
bed narrowPeak
41
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
3
tsv
2
bedpe bed3+
2
hic
Organism
48
Homo sapiens
Biosample type
37
tissue
11
primary cell
Organ
83
kidney
48
musculature of body
42
heart
32
brain
32
limb
26
epithelium
20
connective tissue
18
pancreas
18
ureter
11
vasculature
9
blood vessel
7
eye
5
liver
2
adipose tissue
2
artery
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
48
AMP
Genome assembly (visualization)
45
hg19
43
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
month_released!
January, 2018
BIOSAMPLE
ASSAY
48 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
total RNA-seq
pCHi-C
tissue
muscle of arm
17
muscle of leg
13
psoas muscle
2
2
1
forelimb muscle
1
hindlimb muscle
1
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
1
2
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