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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
9
snATAC-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
31
DNA binding
11
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
19
histone
19
histone modification
12
broad histone mark
12
control
7
narrow histone mark
Date released
26
August, 2017
10
July, 2019
8
January, 2021
5
March, 2020
3
January, 2019
3
November, 2018
2
February, 2020
2
January, 2018
2
June, 2019
2
May, 2022
1
May, 2019
Available data
123
bigWig
117
bam
114
bed narrowPeak
bigBed narrowPeak
62
fastq
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
64
Homo sapiens
Biosample type
44
tissue
13
primary cell
7
cell line
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
8
T1D
Genome assembly (visualization)
27
hg19
7
GRCh38
Lab
56
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
esophagus
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
snATAC-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
peripheral blood mononuclear cell
8
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
cell line
GM12878
6
1
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